TestPhage2

Publications

 

Libusha Kelly’s Pubmed RSS feed

Libusha Kelly’s Google Scholar page

1. Wallace BD, Roberts AB, Pollet RM, Ingle JD, Biernat KA, Pellock SJ, Venkatesh
MK, Guthrie L, O’Neal SK, Robinson SJ, Dollinger M, Figueroa E, McShane SR, Cohen RD, Jin J, Frye SV, Zamboni WC, Pepe-Ranney C, Mani S, Kelly L, Redinbo MR.
Structure and inhibition of microbiome β-Glucuronidases essential to the alleviation of cancer drug toxicity.
Chem Biol. 2015 Sep 17;22(9):1238-49.

2. Smith VH, Rubinstein RJ, Park S, Kelly L, Klepac-Ceraj V.
Microbiology and ecology are vitally important to premedical curricula.
Evol Med Public Health. 2015 Jul 21;2015(1):179-92.

3. Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Rocap G, Moore LR, Chisholm SW.
Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus.
Sci Data. 2014 Sep 30;1:140034.

4. R. R. Malmstrom†, S. Rodrigue†, K. H. Huang, L. Kelly, S. E. Kern, A. Thompson, S. Roggensack, P. M. Berube, M. R. Henn, and S. W. Chisholm.
Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis.
ISME J, vol. 7, no. 1, pp. 184–198, Jan. 2013.

5. S. J. Labrie, K. Frois-Moniz, M. S. Osburne, L. Kelly, S. E. Roggensack, M. B. Sullivan, G. Gearin, Q. Zeng, M. Fitzgerald, M. R. Henn, and S. W. Chisholm.
Genomes of marine cyanopodoviruses reveal multiple origins of diversity.
Environ Microbiol, vol. 15, no. 5, pp. 1356–1376, May 2013.

6. L. Kelly, H. Ding, K. H. Huang, M. S. Osburne, and S. W. Chisholm.
Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent.
ISME J, vol. 7, no. 9, pp. 1827–1841, Sep. 2013.

7. L. Kelly†, K. H. Huang†, H. Ding, and S. W. Chisholm.
ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage.
Nucleic Acids Res, vol. 40, no. Database issue, pp. D632–640, Jan. 2012.

8. L. R. Thompson†, Q. Zeng†, L. Kelly, K. H. Huang, A. U. Singer, J. Stubbe, and S. W. Chisholm
Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism.
Proc Natl Acad Sci U S A, vol. 108, no. 39, pp. E757–764, Sep. 2011.

9. M. B. Sullivan, K. H. Huang, J. C. Ignacio-Espinoza, A. M. Berlin, L. Kelly, P. R. Weigele, A. S. DeFrancesco, S. E. Kern, L. R. Thompson, S. Young, C. Yandava, R. Fu, B. Krastins, M. Chase, D. Sarracino, M. S. Osburne, M. R. Henn, and S. W. Chisholm.
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments.
Environ Microbiol, vol. 12, no. 11, pp. 3035–3056, Nov. 2010.

10. Schlessinger, P. Matsson, J. E. Shima, U. Pieper, S. W. Yee, L. Kelly, L. Apeltsin, R. M. Stroud, T. E. Ferrin, K. M. Giacomini, and A. Sali.
Comparison of human solute carriers.
Protein Sci, vol. 19, no. 3, pp. 412–428, Mar. 2010.

11. M. S. Osburne, B. M. Holmbeck, J. Frias-Lopez, R. Steen, K. Huang, L. Kelly, A. Coe, K. Waraska, A. Gagne, and S. W. Chisholm.
UV hyper-resistance in Prochlorococcus MED4 results from a single base pair deletion just upstream of an operon encoding nudix hydrolase and photolyase.
Environ Microbiol, vol. 12, no. 7, pp. 1978–1988, Jul. 2010.

12. B. Li†, D. Sher†, L. Kelly, Y. Shi, K. Huang, P. J. Knerr, I. Joewono, D. Rusch, S. W. Chisholm, and W. A. van der Donk.
Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.
Proc Natl Acad Sci U S A, vol. 107, no. 23, pp. 10430–10435, Jun. 2010.

13. L. Kelly†, H. Fukushima†, R. Karchin, J. M. Gow, L. W. Chinn, U. Pieper, M. R. Segal, D. L. Kroetz, and A. Sali.
Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains.
Protein Sci, vol. 19, no. 11, pp. 2110–2121, Nov. 2010.

14. M. R. Henn, M. B. Sullivan, N. Stange-Thomann, M. S. Osburne, A. M. Berlin, L. Kelly, C. Yandava, C. Kodira, Q. Zeng, M. Weiand, T. Sparrow, S. Saif, G. Giannoukos, S. K. Young, C. Nusbaum, B. W. Birren, and S. W. Chisholm.
Analysis of high-throughput sequencing and annotation strategies for phage genomes.
PLoS One, vol. 5, no. 2, 2010.

15. M. B. Sullivan, B. Krastins, J. L. Hughes, L. Kelly, M. Chase, D. Sarracino, and S. W. Chisholm.
The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’.
Environ Microbiol, vol. 11, no. 11, pp. 2935–2951, Nov. 2009.

16. U. Pieper, N. Eswar, B. M. Webb, D. Eramian, L. Kelly, D. T. Barkan, H. Carter, P. Mankoo, R. Karchin, M. A. Marti-Renom, F. P. Davis, and A. Sali.
MODBASE, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res, vol. 37, no. Database issue, pp. D347–354, Jan. 2009.

17. U. Pieper, R. Chiang, J. J. Seffernick, S. D. Brown, M. E. Glasner, L. Kelly, N. Eswar, J. M. Sauder, J. B. Bonanno, S. Swaminathan, S. K. Burley, X. Zheng, M. R. Chance, S. C. Almo, J. A. Gerlt, F. M. Raushel, M. P. Jacobson, P. C. Babbitt, and A. Sali.
Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies.
J Struct Funct Genomics, vol. 10, no. 2, pp. 107–125, Apr. 2009.

18. M. Li, F. A. Hays, Z. Roe-Zurz, L. Vuong, L. Kelly, C.-M. Ho, R. M. Robbins, U. Pieper, J. D. 3rd O’Connell, L. J. W. Miercke, K. M. Giacomini, A. Sali, and R. M. Stroud.
Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening.
J Mol Biol, vol. 385, no. 3, pp. 820–830, Jan. 2009.

19. L. Kelly, U. Pieper, N. Eswar, F. A. Hays, M. Li, Z. Roe-Zurz, D. L. Kroetz, K. M. Giacomini, R. M. Stroud, and A. Sali.
A survey of integral alpha-helical membrane proteins.
J Struct Funct Genomics, vol. 10, no. 4, pp. 269–280, Dec. 2009.

20. F. A. Hays, Z. Roe-Zurz, M. Li, L. Kelly, F. Gruswitz, A. Sali, and R. M. Stroud.
Ratiocinative screen of eukaryotic integral membrane protein expression and solubilization for structure determination.
J Struct Funct Genomics, vol. 10, no. 1, Mar. 2009.

21. N. Soranzo, L. Kelly, L. Martinian, M.-W. Burley, M. Thom, A. Sali, D. L. Kroetz, D. B. Goldstein, and S. M. Sisodiya.
Lack of support for a role for RLIP76 (RALBP1) in response to treatment or predisposition to epilepsy.
Epilepsia, vol. 48, no. 4, pp. 674–683, Apr. 2007.

22. L. Kelly, R. Karchin, and A. Sali,
Protein interactions and disease phenotypes in the ABC transporter superfamily.
Pac Symp Biocomput, 2007.

23. U. Pieper, N. Eswar, F. P. Davis, H. Braberg, M. S. Madhusudhan, A. Rossi, M. Marti-Renom, R. Karchin, B. M. Webb, D. Eramian, M.-Y. Shen, L. Kelly, F. Melo, and A. Sali.
MODBASE: a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res, vol. 34, no. Database issue, pp. D291–295, Jan. 2006.

24. T. D. Nguyen, J. M. Gow, L. W. Chinn, L. Kelly, H. Jeong, C. C. Huang, D. Stryke, M. Kawamoto, S. J. Johns, E. Carlson, T. Taylor, T. E. Ferrin, A. Sali, K. M. Giacomini, and D. L. Kroetz.
PharmGKB submission update: IV. PMT submissions of genetic variations.
Pharmacol Rev, vol. 58, no. 1, Mar. 2006.

25. R. Karchin, M. Diekhans, L. Kelly, D. J. Thomas, U. Pieper, N. Eswar, D. Haussler, and A. Sali.
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.
Bioinformatics, vol. 21, no. 12, pp. 2814–2820, Jun. 2005.

26. R. Karchin, L. Kelly, and A. Sali.
Improving functional annotation of non-synonomous SNPs with information theory.
Pac Symp Biocomput, 2005.

27. M. Olivier, V. I. Bustos, M. R. Levy, G. A. Smick, I. Moreno, J. M. Bushard, A. A. Almendras, K. Sheppard, D. L. Zierten, A. Aggarwal, C. S. Carlson, B. D. Foster, N. Vo, L. Kelly, X. Liu, and D. R. Cox.
Complex high-resolution linkage disequilibrium and haplotype patterns of single-nucleotide polymorphisms in 2.5 Mb of sequence on human chromosome 21.
Genomics, vol. 78, no. 1–2, Nov. 2001.

28. M. Olivier, A. et al.
A high-resolution radiation hybrid map of the human genome draft sequence.
Science, vol. 291, no. 5507, pp. 1298–1302, Feb. 2001.

† Indicates that authors contributed equally to the publication